🔖 NetSci 2018 11-15 June 2018 in Paris, France

Bookmarked NetSci 2018 (NetSci 2018)
NetSci 2018, the flagship conference of the Network Science Society, aims to bring together leading researchers and practitioners working in the emerging area of network science. The conference fosters interdisciplinary communication and collaboration in network science research across computer and information sciences, physics, mathematics, statistics, the life sciences, neuroscience, environmental sciences, social sciences, finance and business, arts and design. NetSci 2018 in Paris, France will be a combination of: * An International School for students and non-experts (June 11-12, 2018) * Satellite Symposia (June 11-12, 2018) * A 3-day Conference (June 13-15, 2018) featuring research in a wide range of topics and in different formats, including keynote and invited talks, oral presentations, posters, and lightning talks.
Registration Deadlines:
February 8: Registration opens.
March 20: Registration for presenters of accepted contributions ends.
April 10: Early registration ends.
May 28: Online registration ends.

🔖 9th International Conference on Complex Systems | NECSI

Bookmarked 9th International Conference on Complex Systems | NECSI (necsi.edu)
The International Conference on Complex Systems is a unique interdisciplinary forum that unifies and bridges the traditional domains of science and a multitude of real world systems. Participants will contribute and be exposed to mind expanding concepts and methods from across the diverse field of complex systems science. The conference will be held July 22-27, 2018, in Cambridge, MA, USA. Special Topic - Artificial Intelligence: This year’s conference will include a day on AI, including its development and potential future. This session will be chaired by Iyad Rahwan of MIT's Media Lab.
A great looking conference coming up with a strong line up of people who’s work I appreciate. It could certainly use some more balance however as it’s almost all white men.

In particular I’d want to see:
Albert-László Barabási (Northeastern University, USA)
Nassim Nicholas Taleb (Real World Risk Institute, USA)
Stuart Kauffman (Institute for Systems Biology, USA)
Simon DeDeo (Carnegie Mellon University, USA)
Stephen Wolfram (Wolfram Research)
César Hidalgo (MIT Media Lab, USA)

Others include:
Marta González (University of California Berkeley, USA)
Peter Turchin (University of Connecticut, USA)
Mercedes Pascual (University of Chicago, USA) Pending confirmation
Iyad Rahwan (MIT Media Lab, USA)
Sandy Pentland (MIT Media Lab, USA)
Theresa Whelan (U.S. Department of Defense) Pending DOD approval
H. Eugene Stanley (Boston University, USA)
Ricardo Hausmann (Harvard University, USA)
Stephen Grossberg (Boston University, USA)
Daniela Rus (MIT Computer Science & Artificial Intelligence Lab, USA) Pending confirmation
Olaf Sporns (Indiana University Network Science Institute, USA)
Michelle Girvan (University of Maryland, USA) Pending confirmation
Cameron Kerry (MIT Media Lab, USA)
Irving Epstein (Brandeis University, USA)

🔖 PressForward in the classroom

Bookmarked PressForward in the classroom (pressforward.org)
Do you want to work with students to publish class assignments or research? Instructors use PressForward in the classroom to consolidate and review student assignments, help students learn to survey their fields, and create opportunities for collaboration, communication, and research. The Lewis & Clark College Environmental Studies Program produces Environment Across Boundaries, a student-led publication that cultivates interdisciplinary perspectives on environmental issues. Participation gives students an opportunity to engage with their discipline through experiential, project based learning. They develop skills both in their field and with a suite of digital tools.
An interesting use case for PressForward: creating a “planet” website to aggregate and/or showcase work of students in an entire classroom who are all posting content to their own separate web spaces.

Sketch idea: create a standalone WordPress site for a course, install the PressForward plugin, input the RSS feeds for students’ websites to aggregate all their work collectively into one space. Various ideas include:

  • Use the feed for students and teacher to keep up with the entire classroom.
  • Publish an OPML file for students to easily subscribe to all feeds in their feed reader of choice.
  • Optionally publish the highlights of the best work or even all of it.
  • Teachers could use the feed to check that students are posting/keeping up with assignments for grading purposes.
  • Use the read/unread functionality to “mark” pieces as graded/ungraded or seen/unseen.
  • Use the internal commenting system to keep private notes on student’s work.
  • Create output feeds for specific tags and/or categories
  • Works with any student sites that produce feeds, not just WordPress, so students have choices of different CMSes.
  • Use the nomination functionality to quickly aggregate and disseminate online sources for classroom assignments or readings.

I had contemplated planet like aggregation at the recent WPCampus online conference. It’s interesting to see that PressForward has considered it as a use case as well though I’d love to hear about or see examples of this in the wild.

How else could this rich, multi-functional Swiss Army knife-like plugin be used in education?

Cartoon diagram with a funnel collecting content from sites like YouTube, WordPress, Drupal, Blogger, RSS being aggregated into a single computer-based website.
Diagram of PressForward functionality as a content hub or “planet” courtesy of PressForward.org

Yarns Indie Reader

Bookmarked Yarns Indie Reader by Jack Jamieson (jackjamieson.net)
Over the past little while I’ve been chipping away at an Indie Reader plugin for WordPress. It’s still a bit rough at this point, but works well enough that I’m happy to announce it here. Yarns Indie Reader allows you to subscribe to websites that publish either rss or h-feed. As well as keeping up with your subscriptions, you can like and reply and it create posts on your blog automatically.
I’m hoping this is another great example of the types of feed readers we need in the world. ​​​​​​​

🔖 ScholarlyHub sounds like IndieWeb for Education

Bookmarked Scholarly Hub (ScholarlyHub)
At ScholarlyHub we believe that a critical attitude does not stop with the platforms we use. Growing threats to open science have made it more crucial than before to develop a sustainable, not-for-profit environment. One that allows you to publish, share, and access quality work without financial constraints; find and work with colleagues in fields you’re interested in; develop research and teaching projects; store datasets securely, and mentor and be mentored in order to improve your work and help others. Above all, we want to foster an environment that meets our needs as individuals and scholarly communities and where we are in control, not myopic political agendas, greedy publishers, or data merchants. We believe that scholarship does little good behind pay walls, that metrified rankings rarely promote innovative research, and that transparent communication is vital to quality scholarship and healthy societies. Therefore we’re taking the best of the new and the best of the tried to create a truly open-access repository, publishing service, and scholarly social networking site, with large scope for members' initiatives. And it will be run by scholars: not for profit, greater market share, or political kudos, but for their own growth and everyone’s benefit.
It looks to me like a lot of what ScholarlyHub is doing sounds very similar to the principles behind the IndieWeb. They’re just applying them to the education and research sector.

Most of their manifesto sounds very familiar to me. Because of a lack of plurality, I’m guessing they’re generation 1 creators concentrating on building an inexpensive platform for generations 2 and on.

🔖 Decoding Anagrammed Texts Written in an Unknown Language and Script

Bookmarked Decoding Anagrammed Texts Written in an Unknown Language and Script by Bradley Hauer, Grzegorz Kondrak (Transactions of the Association for Computational Linguistics)
Algorithmic decipherment is a prime example of a truly unsupervised problem. The first step in the decipherment process is the identification of the encrypted language. We propose three methods for determining the source language of a document enciphered with a monoalphabetic substitution cipher. The best method achieves 97% accuracy on 380 languages. We then present an approach to decoding anagrammed substitution ciphers, in which the letters within words have been arbitrarily transposed. It obtains the average decryption word accuracy of 93% on a set of 50 ciphertexts in 5 languages. Finally, we report the results on the Voynich manuscript, an unsolved fifteenth century cipher, which suggest Hebrew as the language of the document.
Aside: It’s been ages since I’ve seen someone with Refbacks listed on their site!

Want to watch: Claude Shannon Project (Documentary)

Bookmarked Claude Shannon Project (IMDb)
Directed by Mark Levinson. With Judith Ivey, Michael Rose, Kaliswa Brewster, Geoff Schuppert. A film about Claude Shannon, the "Father of Information Theory"
I know this shot over a year ago now. I’m wondering what’s happened to their post production schedule? Distribution issues perhaps?

Lemon marmalade by Jeremy Cherfas

Bookmarked Lemon marmalade by Jeremy CherfasJeremy Cherfas (jeremycherfas.net)
One of my dreams, when I first arrived in Rome, was to be able, on a hot summer evening, to walk out to my own lemon tree and pick a still-warm fruit to grace my ice-cold G&T. Sixteen years and four removals later, that tree, bought from a lorry at the side of the road, is still with me and, this wi...
Just as I’ve managed to score a major load of lemons and was looking around for recipes, Jeremy naturally comes up with a brilliant answer.

Also reminds me that I ought to pester Jonathan for his recipe for limoncello as well.

Microblogging by Paul Robert Lloyd

Bookmarked Microblogging by Paul Robert Lloyd (paulrobertlloyd.com)
I stopped using Facebook because I didn’t trust the people behind Facebook. I had grown weary of the sly and underhand tactics used to grow their network and was unwilling to remain part of it. But if I’m honest, I couldn’t trust myself either. Visiting Facebook would elicit behaviour you could only describe as stalking; trawling through the feeds of my friends, seeking out people I vaguely knew. I had better things to do with my time. Almost a decade later, I’m having similar thoughts about Twitter.
He’s got some interesting, but subtle references to pieces of the “old” web including Small Pieces, Loosely Joined.
​​​​​​

Physicists Aim to Classify All Possible Phases of Matter | Quanta Magazine

Bookmarked Physicists Aim to Classify All Possible Phases of Matter by Natalie WolchoverNatalie Wolchover (Quanta Magazine)
A complete classification could lead to a wealth of new materials and technologies. But some exotic phases continue to resist understanding.

🔖 [1801.06022] Reconstruction Codes for DNA Sequences with Uniform Tandem-Duplication Errors | arXiv

Bookmarked Reconstruction Codes for DNA Sequences with Uniform Tandem-Duplication Errors by Yonatan Yehezkeally and Moshe Schwartz (arxiv.org)
DNA as a data storage medium has several advantages, including far greater data density compared to electronic media. We propose that schemes for data storage in the DNA of living organisms may benefit from studying the reconstruction problem, which is applicable whenever multiple reads of noisy data are available. This strategy is uniquely suited to the medium, which inherently replicates stored data in multiple distinct ways, caused by mutations. We consider noise introduced solely by uniform tandem-duplication, and utilize the relation to constant-weight integer codes in the Manhattan metric. By bounding the intersection of the cross-polytope with hyperplanes, we prove the existence of reconstruction codes with greater capacity than known error-correcting codes, which we can determine analytically for any set of parameters.

🔖 Pods Framework

Bookmarked Pods Framework (Pods Framework)
The Pods Framework is an open-source, GPLv2+ licensed PHP project released on October 8th, 2008. The goal was to create an interface and PHP codebase to easily create, extend, and manage content types within WordPress. While the normal WordPress content architecture is limited to the built-in tables, a primary feature of Pods allows you to base content types off of their own custom tables designed around each content types’ needs. The Pods Framework allows an ordinary user or developer to easily create and extend custom post types, content types, taxonomies, users, media, or comments — helping you keep your content organized and speed up the development of your project. Pods starts as a blank slate, as most frameworks do. The control is put into the hands of the developer to mould it into what is needed, without the fluff. Much of Pods’ functionality is coupled with a UI for easy administration, however, there are large portions of the codebase that can be optionally used for advanced implementations or specific project needs. You control everything while Pods Framework does the behind-the-scenes heavy lifting.

Bret Victor, beast of burden

Bookmarked Bret Victor, beast of burden by Bret Victor (worrydream.com)
Bret Victor has been provided by the management for your protection.
This is awesome looking website. The transitions between pages are quite lovely and not the same as everything else out there.

I love what happens when you click on the tagline under the site name multiple times. Then keep on clicking… be careful though.

Why More Linear Algebra? by David Austin

Bookmarked Why More Linear Algebra? by David Austin (More Linear Algebra)
The main purpose of this blog is to share updates about the open-access, open-source textbook Understanding Linear Algebra. Though work is continuing on this project, the HTML version of the text is now freely available, the forthcoming PDF version will also be free, and low-cost print options will be provided. The PreTeXt source code will be posted on GitHub as well.
h/t Robert Talbert

🔖 Nonlinear Dynamics 1 & 2: Geometry of Chaos by Predrag Cvitanovic

Bookmarked Nonlinear Dynamics 1 & 2: Geometry of Chaos by Predrag CvitanovicPredrag Cvitanovic (Georgia Institute of Technology)
The theory developed here (that you will not find in any other course :) has much in common with (and complements) statistical mechanics and field theory courses; partition functions and transfer operators are applied to computation of observables and spectra of chaotic systems. Nonlinear dynamics 1: Geometry of chaos (see syllabus) Topology of flows - how to enumerate orbits, Smale horseshoes Dynamics, quantitative - periodic orbits, local stability Role of symmetries in dynamics Nonlinear dynamics 2: Chaos rules (see syllabus) Transfer operators - statistical distributions in dynamics Spectroscopy of chaotic systems Dynamical zeta functions Dynamical theory of turbulence The course, which covers the same material and the same exercises as the Georgia Tech course PHYS 7224, is in part an advanced seminar in nonlinear dynamics, aimed at PhD students, postdoctoral fellows and advanced undergraduates in physics, mathematics, chemistry and engineering.
An interesting looking online course that appears to be on a white-labeled Coursera platform.

I’ve come across Predrag Cvitanovic’s work on Group Theory and Lie Groups before, so this portends some interesting work. I’ll have to see if I can carve out some time to sample some of it.