Bookmarked At the Interface of Algebra and Statistics by Tai-Danae Bradley (
This thesis takes inspiration from quantum physics to investigate mathematical structure that lies at the interface of algebra and statistics. The starting point is a passage from classical probability theory to quantum probability theory. The quantum version of a probability distribution is a density operator, the quantum version of marginalizing is an operation called the partial trace, and the quantum version of a marginal probability distribution is a reduced density operator. Every joint probability distribution on a finite set can be modeled as a rank one density operator. By applying the partial trace, we obtain reduced density operators whose diagonals recover classical marginal probabilities. In general, these reduced densities will have rank higher than one, and their eigenvalues and eigenvectors will contain extra information that encodes subsystem interactions governed by statistics. We decode this information, and show it is akin to conditional probability, and then investigate the extent to which the eigenvectors capture "concepts" inherent in the original joint distribution. The theory is then illustrated with an experiment that exploits these ideas. Turning to a more theoretical application, we also discuss a preliminary framework for modeling entailment and concept hierarchy in natural language, namely, by representing expressions in the language as densities. Finally, initial inspiration for this thesis comes from formal concept analysis, which finds many striking parallels with the linear algebra. The parallels are not coincidental, and a common blueprint is found in category theory. We close with an exposition on free (co)completions and how the free-forgetful adjunctions in which they arise strongly suggest that in certain categorical contexts, the "fixed points" of a morphism with its adjoint encode interesting information.

🔖 A de Bruijn identity for discrete random variables by Oliver Johnson, Saikat Guha

Bookmarked A de Bruijn identity for discrete random variables by Oliver Johnson, Saikat Guha (
We discuss properties of the "beamsplitter addition" operation, which provides a non-standard scaled convolution of random variables supported on the non-negative integers. We give a simple expression for the action of beamsplitter addition using generating functions. We use this to give a self-contained and purely classical proof of a heat equation and de Bruijn identity, satisfied when one of the variables is geometric.

🔖 A Physical Basis for the Second Law of Thermodynamics: Quantum Nonunitarity

Bookmarked A Physical Basis for the Second Law of Thermodynamics: Quantum Nonunitarity (
It is argued that if the non-unitary measurement transition, as codified by Von Neumann, is a real physical process, then the "probability assumption" needed to derive the Second Law of Thermodynamics naturally enters at that point. The existence of a real, indeterministic physical process underlying the measurement transition would therefore provide an ontological basis for Boltzmann's Stosszahlansatz and thereby explain the unidirectional increase of entropy against a backdrop of otherwise time-reversible laws. It is noted that the Transactional Interpretation (TI) of quantum mechanics provides such a physical account of the non-unitary measurement transition, and TI is brought to bear in finding a physically complete, non-ad hoc grounding for the Second Law.
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Quantum Information Meets Quantum Matter

Bookmarked Quantum Information Meets Quantum Matter -- From Quantum Entanglement to Topological Phase in Many-Body Systems (
This is the draft version of a textbook, which aims to introduce the quantum information science viewpoints on condensed matter physics to graduate students in physics (or interested researchers). We keep the writing in a self-consistent way, requiring minimum background in quantum information science. Basic knowledge in undergraduate quantum physics and condensed matter physics is assumed. We start slowly from the basic ideas in quantum information theory, but wish to eventually bring the readers to the frontiers of research in condensed matter physics, including topological phases of matter, tensor networks, and symmetry-protected topological phases.
Bookmarked Selective pressures on genomes in molecular evolution by Charles Ofria, Christoph Adami, Travis C. Collier (, 15 Jan 2003)
We describe the evolution of macromolecules as an information transmission process and apply tools from Shannon information theory to it. This allows us to isolate three independent, competing selective pressures that we term compression, transmission, and neutrality selection. The first two affect genome length: the pressure to conserve resources by compressing the code, and the pressure to acquire additional information that improves the channel, increasing the rate of information transmission into each offspring. Noisy transmission channels (replication with mutations) gives rise to a third pressure that acts on the actual encoding of information; it maximizes the fraction of mutations that are neutral with respect to the phenotype. This neutrality selection has important implications for the evolution of evolvability. We demonstrate each selective pressure in experiments with digital organisms.
To be published in J. theor. Biology 222 (2003) 477-483
DOI: 10.1016/S0022-5193(03)00062-6
Bookmarked The structure of degradable quantum channels by Toby S. Cubitt, Mary Beth Ruskai, Graeme Smith (Journal of Mathematical Physics 49, 102104 (2008))
Degradable quantum channels are among the only channels whose quantum and private classical capacities are known. As such, determining the structure of these channels is a pressing open question in quantum information theory. We give a comprehensive review of what is currently known about the structure of degradable quantum channels, including a number of new results as well as alternate proofs of some known results. In the case of qubits, we provide a complete characterization of all degradable channels with two dimensional output, give a new proof that a qubit channel with two Kraus operators is either degradable or anti-degradable, and present a complete description of anti-degradable unital qubit channels with a new proof. For higher output dimensions we explore the relationship between the output and environment dimensions (dB and dE, respectively) of degradable channels. For several broad classes of channels we show that they can be modeled with an environment that is “small” in the sense of ΦC. Such channels include all those with qubit or qutrit output, those that map some pure state to an output with full rank, and all those which can be represented using simultaneously diagonal Kraus operators, even in a non-orthogonal basis. Perhaps surprisingly, we also present examples of degradable channels with “large” environments, in the sense that the minimal dimension dE>dB. Indeed, one can have dE>14d2B. These examples can also be used to give a negative answer to the question of whether additivity of the coherent information is helpful for establishing additivity for the Holevo capacity of a pair of channels. In the case of channels with diagonal Kraus operators, we describe the subclasses that are complements of entanglement breaking channels. We also obtain a number of results for channels in the convex hull of conjugations with generalized Pauli matrices. However, a number of open questions remain about these channels and the more general case of random unitary channels.
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