Book Review: John Avery’s “Information Theory and Evolution”

Information Theory and Evolution Book Cover Information Theory and Evolution
John Avery
Non-fiction, Popular Science
World Scientific
January 1, 2003
paperback
217

This highly interdisciplinary book discusses the phenomenon of life, including its origin and evolution (and also human cultural evolution), against the background of thermodynamics, statistical mechanics, and information theory. Among the central themes is the seeming contradiction between the second law of thermodynamics and the high degree of order and complexity produced by living systems. This paradox has its resolution in the information content of the Gibbs free energy that enters the biosphere from outside sources, as the author shows. The role of information in human cultural evolution is another focus of the book. One of the final chapters discusses the merging of information technology and biotechnology into a new discipline — bio-information technology.

Information Theory and EvolutionInformation Theory and Evolution by John Avery
My rating: 3 of 5 stars

This is a fantastic book which, for the majority of people, I’d give a five star review. For my own purposes, however, I was expecting far more on the theoretical side of information theory and statistical mechanics as applied to microbiology that it didn’t live up to, so I’m giving it three stars from a purely personal perspective.

I do wish that someone had placed it in my hands and forced me to read it when I was a freshman in college entering the study of biomedical and electrical engineering. It is far more an impressive book at this level and for those in the general public who are interested in the general history of science and philosophy of the topics. The general reader may be somewhat scared by a small amount of mathematics in chapter 4, but there is really no loss of continuity by skimming through most of it. For those looking for a bit more rigor, Avery provides some additional details in appendix A, but for the specialist, the presentation is heavily lacking.

The book opens with a facile but acceptable overview of the history of the development for the theory of evolution whereas most other texts would simply begin with Darwin’s work and completely skip the important philosophical and scientific contributions of Aristotle, Averroes, Condorcet, Linnaeus, Erasmus Darwin, Lamarck, or the debates between Cuvier and St. Hilaire.

For me, the meat of the book was chapters 3-5 and appendix A which collectively covered molecular biology, evolution, statistical mechanics, and a bit of information theory, albeit from a very big picture point of view. Unfortunately the rigor of the presentation and the underlying mathematics were skimmed over all too quickly to accomplish what I had hoped to gain from the text. On the other hand, the individual sections of “suggestions for further reading” throughout the book seem well researched and offer an acceptable launching pad for delving into topics in places where they may be covered more thoroughly.

The final several chapters become a bit more of an overview of philosophy surrounding cultural evolution and information technology which are much better covered and discussed in James Gleick’s recent book The Information.

Overall, Avery has a well laid out outline of the broad array of subjects and covers it all fairly well in an easy to read and engaging style.

View all my reviews

Reading Progress
  • Started book on 07/11/11
  • Finished book on 08/14//11

The Adventures of Sherlock Holmes

The Adventures of Sherlock Holmes Book Cover The Adventures of Sherlock Holmes
Sherlock Holmes, #3
Arthur Conan Doyle
mystery, detective
The Strand Magazine
1892
Kindle e-book
Amazon

Comprising the series of short stories that made the fortunes of the Strand, the magazine in which they were first published, this volume won even more popularity for Sherlock Holmes and Dr. Watson. Holmes is at the height of his powers in many of his most famous cases, including The Red-Headed League, The Speckled Band, and The Blue Carbuncle.

The original “procedural”, but in fiction form and focusing on logic instead of high tech science.

Read between January 02 – May 09, 2011

Quotes and Highlights:

You may remember the old Persian saying, ‘There is danger for him who taketh the tiger cub, and danger also for whoso snatches a delusion from a woman.’ There is as much sense in Hafiz as in Horace, and as much knowledge of the world.

Singularity is almost invariably a clue. The more featureless and commonplace a crime is, the more difficult it is to bring it home.

Well, moonshine is a brighter thing than fog, …

…as I said then, that a man should keep his little brain-attic stocked with all the furniture that he is likely to use, and the rest he can put away in the lumber-room of his library, where he can get it if he wants it.

“My God! It’s Watson,” said he. He was in a pitiable state of reaction, with every nerve in a twitter.

41% Note: An interesting early use of @Twitter…

I should be very much obliged if you would slip your revolver into your pocket. An Eley’s No. 2 is an excellent argument with gentlemen who can twist steel pokers into knots. That and a tooth-brush are, I think, all that we need.

magnifying lens.

87% First reference to Holmes with a magnifying lens in print that I’ve seen.Like

Synthetic Biology’s Hunt for the Genetic Transistor | IEEE Spectrum

Read Synthetic Biology's Hunt for the Genetic Transistor (spectrum.ieee.org)
How genetic circuits will unlock the true potential of bioengineering 
This is a great short article on bioengineering and synthetic biology written for the layperson. It’s also one of the best crash courses I’ve read on genetics in a while.

New Measures of Scholarly Impact | Inside Higher Ed

Read New Measures of Scholarly Impact (insidehighered.com)
Data analytics are changing the ways to judge the influence of papers and journals.
This article from earlier in the month has some potentially profound affects on the research and scientific communities. Some of the work and research being done here will also have significant affect on social media communities in the future as well.

The base question is are citations the best indicator of impact, or are there other better emerging methods of indicating the impact of scholarly work?

Finished reading Induction and Intuition in Scientific Thought by P.B. Medawar

Originally published in 1969. This book explains what is wrong with the traditional methodology of “inductive” reasoning and shows that the alternative scheme of reasoning associated with Whewell, Pierce and Popper can give the scientist a useful insight into the way he thinks.

References:

Brief Review: Santiago Ramón y Cajal’s “Advice for a Young Investigator”

Read Advice for a Young Investigator (1852-1934)
Advice for a Young Investigator Book Cover Advice for a Young Investigator
Santiago Ramón y Cajal
Biography & Autobiography
MIT Press
2004
book (paperback)
150
Library

This recently rediscovered classic, first published in 1897, is an anecdotal guide for the perplexed new scientific investigator as well as a refreshing resource for the old pro.

Book Cover for Advice for a Young Investigator
Written by Santiago Ramon y Cajal and translated by Larry W. Swanson and Neely Swanson.

This is certainly worth the read for the high qualities of its translation and vocabulary. There are lots of great aphorisms and brilliant bits of advice. Some of the parts about patriotism and information about things like picking a wife are anachronistically funny to read 100+ years after they were written.