👓 Mathematics matters | Bits of DNA

Read Mathematics matters by Lior PachterLior Pachter (Bits of DNA)
Six years ago I received an email from a colleague in the mathematics department at UC Berkeley asking me whether he should participate in a study that involved “collecting DNA from the brigh…
Not sure how I had missed this in the brouhaha a few weeks back, but it’s one of the more sober accounts from someone who’s actually got some math background and some reasonable idea about the evolutionary theory involved. It had struck me quite significantly that both Gowers and Tao weighed in as they did given their areas of expertise (or not). Perhaps it was worthwhile simply for the attention they brought? Gowers did specifically at least call out his lack of experience and asked for corrections, though I didn’t have the fortitude to wade through his hundreds of comments–perhaps this stands in part because there was little, if any indication of the background and direct identity of any of the respondents within the thread. As an simple example, while reading the comments on Dr. Pachter’s site, I’m surprised there is very little indication of Nicholas Bray’s standing there as he’s one of Pachter’s students. It would be much nicer if, in fact, Bray had a more fully formed and fleshed out identity there or on his linked Gravatar page which has no detail at all, much less an actual avatar!

This post, Gowers’, and Tao’s are all excellent reasons for a more IndieWeb philosophical approach in academic blogging (and other scientific communication). Many of the respondents/commenters have little, if any, indication of their identities or backgrounds which makes it imminently harder to judge or trust their bonafides within the discussion. Some even chose to remain anonymous and throw bombs. If each of the respondents were commenting (preferably using their real names) on their own websites and using the Webmention protocol, I suspect the discussion would have been richer and more worthwhile by an order of magnitude. Rivin at least had a linked Twitter account with an avatar, though I find it less than useful that his Twitter account is protected, a fact that makes me wonder if he’s only done so recently as a result of fallout from this incident? I do note that it at least appears his Twitter account links to his university website and vice-versa, so there’s a high likelihood that they’re at least the same person.

I’ll also note that a commenter noted that they felt that their reply had been moderated out of existence, something which Lior Pachter certainly has the ability and right to do on his own website, but which could have been mitigated had the commenter posted their reply on their own website and syndicated it to Pachter’s.

Hiding in the comments, which are generally civil and even-tempered, there’s an interesting discussion about academic publishing that could have been its own standalone post. Beyond the science involved (or not) in this entire saga, a lot of the background for the real story is one of process, so this comment was one of my favorite parts.

Replied to a tweet by Codex Editor (Twitter)
To break your literacy boundaries, try taking a look at Lynne Kelly‘s work on orality and memory (Knowledge and Power, Songlines, et al.). Duane Hamacher, et al. have a great new book out as well. And try Ong’s work on orality too. There are lots of non-literate tools for thought hiding out there.

👓 a post | Flashing Palely in the Margins | Sameer Vasta

Read a post by Sameer VastaSameer Vasta (inthemargins.ca)
[...] We like to tell ourselves that micro.blog is a great place because we are civil and we have good conversations and discussions, even when we disagree, but I have faced more dismissiveness and insult on micro.blog in the past year than I have at any time in that other “micro” social network. This is not the civil community that we make it out to be, and by pretending that it is, we ignore when people feel actively excluded. [...]
Annotated Journal of the First Voyage to America, 1492-1493 (Excerpt) by Christopher Columbus ( The Open Anthology of Earlier American Literature)
IN THE NAME OF OUR LORD JESUS CHRIST

I thought this was important all on its own. Did they put this before everything? Was he just really religious?–Tmoon95 annotation on September 9, 2015

This statement also has a lot to do with the culture of the time: The Tribunal of the Holy Office of the Inquisition (Spanish: Tribunal del Santo Oficio de la Inquisición), commonly known as the Spanish Inquisition (Inquisición española), was established in 1478 by Catholic Monarchs Ferdinand II of Aragon and Isabella I of Castile. It was intended to maintain Catholic orthodoxy in their kingdoms and to replace the Medieval Inquisition, which was under Papal control.

Recall that Ferdinand and Isabella were the reigning monarchs who funded Columbus’ voyages.

Annotated Have you “Moved to Substack”? by Ray (Blogroll.org)
...when I browse from someone’s blog over to their Substack it feels like going from a sweet little neighborhood into a staid corporate park. A little piece of joy dies in me when that happens because it’s another reminder of the corporatization of the web. 

👓 New open web social apps to check out | AltPlatform

Read New open web social apps to check out by Brian Hendrickson (AltPlatform)
People love sharing on the internet and the technology is always evolving. Enthusiasts recently flocked to Kickstarter to back a new blogging tool, Micro.blog, RSS and podcasting pioneer Dave Winer released a new open source app, 1999.io, and the old bones of micro-blogging phenom identi.ca are bac...
Followed Eugene Wei (Remains of the Day)

Remains of the Day is a personal blog started in 2001 covering a random assortment of topics of interest. That doesn't narrow things down much because I have both attention deficit and surplus.

I live in San Francisco. Before that I lived in Los Angeles, New York, Seattle, and Chicago, where I grew up.

Most of my professional career has been spent at consumer internet companies. The world wide web was just heating up when I finished my undergrad education, and like many grads from Stanford, tech was always top of mind. I started off at Amazon.com and was there for seven years working on all sorts of things, but mostly product. I left Amazon to be a filmmaker, went to editing school at The Edit Center in NYC, then to UCLA Film School in their graduate directing program. But tech pulled me back in after just one year in film school. 

That summer I joined the company that would become Hulu, leading the product, design, editorial, and marketing teams. In 2011 I formed a startup called Erly with a few friends. We were purchased in 2012 by Airtime, and I left that in late 2012. I was the head of product at Flipboard for two years, then the Head of Video at Oculus, which I left in July 2017. I'm now working on some of my own ideas, most of which sit at the intersection of media and technology, as well as doing some advising and angel investing.

You can find more fragments of me scattered across the web at TwitterFacebook, Instagram, and Letterboxd, among others.

You can also email me at eugene at eugenewei dot com.

👓 Original Big Bird, Caroll Spinney, Leaves ‘Sesame Street’ After Nearly 50 Years | New York Times

Read Original Big Bird, Caroll Spinney, Leaves ‘Sesame Street’ After Nearly 50 Years by Dave ItzkoffDave Itzkoff (New York Times)
Mr. Spinney’s remarkable run as Big Bird and Oscar the Grouch, two of the most beloved characters on television, will end this week.
Goodbye bird. We’ll miss you!

Knowledge management practices on romantic display in George Eliot’s Middlemarch

Given that George Eliot had her own commonplace book, it’s fascinating but not surprising to see a section of prose about note taking and indexing practices in Middlemarch (set in 1829 to 1832 and published in 1871-1872) literally as the romance story is just beginning to brew. [Naturally a romance with index cards at its heart is just my cup of tea, n’cest pas?] Presently it’s not surprising to see the romance of an independent thinking woman stem out of an intellectual practice (dominated heavily by men at the time) that was fairly common in its day, but for it’s time such an incongruous juxtaposition may have been jarring to some readers.

In chapter two Mr. Brooke, the uncle, asks for advice about arranging notes as he has tried pigeon holes as a method but has the common issue of multiple storage and can’t remember under which letter he’s filed his particular note. [At the time, many academics would employ secretarial staff to copy their note cards multiple times so that a note that needed to be classified under “hope” and “liberty”, as an example, could be filed under both. Individuals working privately without the support of an amanuensis or additional indexing techniques would have had more difficulty with filing material in the same manner Mr Brooke did. Digital note takers using platforms like Obsidian or Logseq don’t have to worry about such issues now.]

Mr. Casaubon indicates that he uses pigeon-holes which was a popular method of filing, particularly in Britain where John Murray and the editors of the Oxford English Dictionary were using a similar method to build their dictionary at the time.

Our heroine Dorothea Brooke mentions that she knows how to properly index papers so that they might be searched for and found later. She is likely aware of John Locke’s indexing method from 1685 (or in English in 1706) and in the same passage—and almost the same breath—compares Mr. Casaubon’s appearance favorably to that of Locke as “one of the most distinguished-looking men I ever saw.”

In some sense here, we should be reading the budding romance, not just as one based on beautiful appearance or one’s station or even class, but one of intellectual stature and equality. One wants a mate not only as distinguished and handsome as Locke, but one with the beauty of mind as well. Without the subtextual understanding of knowledge management during this time period, this crucial component of the romance would be missed though Eliot later hints at it by many other means. Still, in the opening blushes of love, it is there on prominent display.

For those without their copies close at hand, here’s the excerpted passage:

“I made a great study of theology at one time,” said Mr Brooke, as if to explain the insight just manifested. “I know something of all schools. I knew Wilberforce in his best days. Do you know Wilberforce?
“Mr Casaubon said, “No.”
“Well, Wilberforce was perhaps not enough of a thinker; but if I went into Parliament, as I have been asked to do, I should sit on the independent bench, as Wilberforce did, and work at philanthropy.”
Mr Casaubon bowed, and observed that it was a wide field.
“Yes,” said Mr Brooke, with an easy smile, “but I have documents. I began a long while ago to collect documents. They want arranging, but when a question has struck me, I have written to somebody and got an answer. I have documents at my back. But now, how do you arrange your documents?”
“In pigeon-holes partly,” said Mr Casaubon, with rather a startled air of effort.
“Ah, pigeon-holes will not do. I have tried pigeon-holes, but everything getsmixed in pigeon-holes: I never know whether a paper is in A or Z.”
“I wish you would let me sort your papers for you, uncle,” said Dorothea. “I would letter them all, and then make a list of subjects under each letter.
“Mr Casaubon gravely smiled approval, and said to Mr Brooke, “You have an excellent secretary at hand, you perceive.”
“No, no,” said Mr Brooke, shaking his head; “I cannot let young ladies meddle with my documents. Young ladies are too flighty.
“Dorothea felt hurt. Mr Casaubon would think that her uncle had some special reason for delivering this opinion, whereas the remark lay in his mind as lightly as the broken wing of an insect among all the other fragments there, and a chance current had sent it alighting on her.
When the two girls were in the drawing-room alone, Celia said—
“How very ugly Mr Casaubon is!”
“Celia! He is one of the most distinguished-looking men I ever saw. He is remarkably like the portrait of Locke. He has the same deep eye-sockets.”

—George Eliot in Middlemarch (Norton Critical Edition, 2nd edition, Bert G. Hornback ed., 2000), Book I, Chapter 2, p13.

🎧 This Week in Google: #431 Mordor, She Wrote | TWiT.TV

Listened to This Week in Google: #431 Mordor, She Wrote from TWiT.TV
Pixel Buds are getting bad reviews. Blasting Facebook and Google. Amazon pays $250 Million for Lord of the Rings TV rights. Alibaba's $25 billion Singles' Day. Self-driving trucks and flying cars. Hacking the Boeing 757. Xerox Alto turns 40.

https://youtu.be/cq4QqGy1sGE