I'm a biomedical and electrical engineer with interests in information theory, complexity, evolution, genetics, signal processing, IndieWeb, theoretical mathematics, and big history.
I'm also a talent manager-producer-publisher in the entertainment industry with expertise in representation, distribution, finance, production, content delivery, and new media.
Running a brain-twisting thought experiment for real shows that information is a physical thing – so can we now harness the most elusive entity in the cosmos?
This is a nice little overview article of some of the history of thermodynamics relating to information in physics and includes some recent physics advances as well. There are a few references to applications in biology at the micro level as well.
In his 2010 book, Life Ascending: The Ten Great Inventions of Evolution, Nick Lane, a biochemist at University College London, explores with eloquence and clarity the big questions of life: how it began, why we age and die, and why we have sex. Lane been steadily constructing an alternative view of evolution to the one in which genes explain it all. He argues that some of the major events during evolutionary history, including the origin of life itself, are best understood by considering where the energy comes from and how it is used. Lane describes these ideas in his 2015 book, The Vital Question: Why Is Life the Way It Is?. Recently Bill Gates called it “an amazing inquiry into the origins of life,” adding, Lane “is one of those original thinkers who make you say: More people should know about this guy’s work.” Nautilus caught up with Lane in his laboratory in London and asked him about his ideas on aging, sex, and death.
Biochemist Nick Lane explains the elements of life, sex, and aging in an engaging popular science interview.
...I rejoice that a major new database was launched today. It’s not in my area, so I won’t be using it, but I am nevertheless very excited that it exists. It is called the L-functions and modular forms database. The thinking behind the site is that lots of number theorists have privately done lots of difficult calculations concerning L-functions, modular forms, and related objects. Presumably up to now there has been a great deal of duplication, because by no means all these calculations make it into papers, and even if they do it may be hard to find the right paper. But now there is a big database of these objects, with a large amount of information about each one, as well as a great big graph of connections between them. I will be very curious to know whether it speeds up research in number theory: I hope it will become a completely standard tool in the area and inspire people in other areas to create databases of their own.
…I rejoice that a major new database was launched today. It’s not in my area, so I won’t be using it, but I am nevertheless very excited that it exists. It is called the L-functions and modular forms database. The thinking behind the site is that lots of number theorists have privately done lots of difficult calculations concerning L-functions, modular forms, and related objects. Presumably up to now there has been a great deal of duplication, because by no means all these calculations make it into papers, and even if they do it may be hard to find the right paper. But now there is a big database of these objects, with a large amount of information about each one, as well as a great big graph of connections between them. I will be very curious to know whether it speeds up research in number theory: I hope it will become a completely standard tool in the area and inspire people in other areas to create databases of their own.
Tom M. Apostol, professor of mathematics, emeritus at California Institute of Technology passed away on May 8, 2016. He was 92.
My proverbial mathematical great-grandfather passed away yesterday.
As many know, for over a decade, I’ve been studying a variety of areas of advanced abstract mathematics with Michael Miller. Mike Miller received his Ph.D. in 1974 (UCLA) under the supervision of Basil Gordon who in turn received his Ph.D. in 1956 (CalTech) under the supervision of Tom M. Apostol.
Incidentally going back directly three generations is Markov and before that Chebyshev and two generations before that Lobachevsky.
Sadly, I never got to have Tom as a teacher directly myself, though I did get to meet him several times in (what mathematicians might call) social situations. I did have the advantage of delving into his two volumes of Calculus as well as referring to his book on Analytic Number Theory. If it’s been a while since you’ve looked at calculus, I highly recommend an evening or two by the fire with a glass of wine while you revel in Calculus, Vol 1 or Calculus, Vol 2.
It’s useful to take a moment to remember our intellectual antecedents, so in honor of Tom’s passing, I recommend the bookmarked very short obituary (I’m sure more will follow), this obituary of Basil, and this issue of the Notices of the AMS celebrating Basil as well. I also came across a copy of Fascinating Mathematical People which has a great section on Tom and incidentally includes some rare younger photos of Sol Golomb who suddenly passed away last Sunday. (It’s obviously been a tough week for me and math in Southern California this week.)
Somehow Basil Gordon (brown sweater) and I were recognized on the same day at an event for Johns Hopkins University. Later we discovered that he had overseen the Ph.D. of one of my long-time mathematics professors and he was a lifelong friend of my friend/mentor Solomon Golomb. — at Loews Santa Monica Beach Hotel on March 13, 2010
Michael Miller making a “handwaving argument” during a lecture on Algebraic Number Theory at UCLA on November 15, 2015. I’ve taken over a dozen courses from Mike in areas including Group Theory, Field Theory, Galois Theory, Group Representations, Algebraic Number Theory, Complex Analysis, Measure Theory, Functional Analysis, Calculus on Manifolds, Differential Geometry, Lie Groups and Lie Algebras, Set Theory, Differential Geometry, Algebraic Topology, Number Theory, Integer Partitions, and p-Adic Analysis.
I was getting concerned that I hadn’t heard back from Sol for a while, particularly after emailing him late last week, and then I ran across this notice through ITSOC & the IEEE:
Solomon W. Golomb (May 30, 1932 – May 1, 2016)
Shannon Award winner and long-time ITSOC member Solomon W. Golomb passed away on May 1, 2016.
Solomon W. Golomb was the Andrew Viterbi Chair in Electrical Engineering at the University of Southern California (USC) and was at USC since 1963, rising to the rank of University and Distinguished Professor. He was a member of the National Academies of Engineering and Science, and was awarded the National Medal of Science, the Shannon Award, the Hamming Medal, and numerous other accolades. As USC Dean Yiannis C. Yortsos wrote, “With unparalleled scholarly contributions and distinction to the field of engineering and mathematics, Sol’s impact has been extraordinary, transformative and impossible to measure. His academic and scholarly work on the theory of communications built the pillars upon which our modern technological life rests.”
In addition to his many contributions to coding and information theory, Professor Golomb was one of the great innovators in recreational mathematics, contributing many articles to Scientific American and other publications. More recent Information Theory Society members may be most familiar with his mathematics puzzles that appeared in the Society Newsletter, which will publish a full remembrance later.
A quick search a moment later revealed this sad confirmation along with some great photos from an award Sol received just a week ago:
A sad day 4 @USC@USCViterbi@USCMingHsiehEE with the loss of beloved Sol Golomb. Was only last week we celebrated his Franklin medal.
As is common in academia, I’m sure it will take a few days for the news to drip out, but the world has certainly lost one of its greatest thinkers, and many of us have lost a dear friend, colleague, and mentor.
I’ll try touch base with his family and pass along what information sniff I can. I’ll post forthcoming obituaries as I see them, and will surely post some additional thoughts and reminiscences of my own in the coming days.
President Barack Obama presents Solomon Golomb with the National Medal of Science at an awards ceremony held at the White House in 2013.
We don’t yet know quite what a physics of biology will consist of. But we won’t understand life without it.
This is an awesome little article with some interesting thought and philosophy on the current state of physics within biology and other related areas of study. It’s also got some snippets of history which aren’t frequently discussed in longer form texts.
Many regular readers here are sure to know who Claude Shannon is, but sadly most of the rest of the world is in the dark. To give you an idea of his importance in society and even a bit in pop culture, today’s Google doodle celebrates Shannon’s life and work.
Overview of Shannon’s Work
Most importantly, Shannon, in his 1937 Master’s Thesis at Massachusetts Institute of Technology applied George Boole’s algebra (better known now as Boolean Algebra) to electric circuits thereby making the modern digital revolution possible. To give you an idea of how far we’ve come, the typical high school student can now read and understand all of its content. If you’d like to give it a try, you can download it from MIT’s website.
His other huge accomplishment was a journal article he wrote in 1948 entitled “A Mathematical Theory of Communication” in the Bell Labs Journal. When it was republished a year later, one of the most notable changes was in the new title “TheMathematical Theory of Communication.” While copies of the original article are freely available on the internet, the more casual reader will appreciate the more recent edition from MIT Press which also includes a fabulous elucidative and extensive opening written by Warren Weaver. This paper contains the theoretical underpinning that allowed for the efflorescence of all modern digital communication to occur. It ranks as one of the most influential and far-reaching documents in human history rivaling even the Bible.
An exclusive look at data from the controversial web site Sci-Hub reveals that the whole world, both poor and rich, is reading pirated research papers.
Sci Hub has been in the news quite a bit over the past half a year and the bookmarked article here gives some interesting statistics. I’ll preface some of the following editorial critique with the fact that I love John Bohannon’s work; I’m glad he’s spent the time to do the research he has. Most of the rest of the critique is aimed at the publishing industry itself.
From a journalistic standpoint, I find it disingenuous that the article didn’t actually hyperlink to Sci Hub. Neither did it link out (or provide a full quote) to Alicia Wise’s Twitter post(s) nor link to her rebuttal list of 20 ways to access their content freely or inexpensively. Of course both of these are editorial related, and perhaps the rebuttal was so flimsy as to be unworthy of a link from such an esteemed publication anyway.
Sadly, Elsevier’s list of 20 ways of free/inexpensive access doesn’t really provide any simple coverage for graduate students or researchers in poorer countries which are the likeliest group of people using Sci Hub, unless they’re going to fraudulently claim they’re part of a class which they’re not, and is this morally any better than the original theft method? It’s almost assuredly never used by patients, which seem to be covered under one of the options, as the option to do so is painfully undiscoverable past their typical $30/paper firewalls. Their patchwork hodgepodge of free access is so difficult to not only discern, but one must keep in mind that this is just one of dozens of publishers a researcher must navigate to find the one thing they’re looking for right now (not to mention the thousands of times they need to do this throughout a year, much less a career).
Consider this experiment, which could be a good follow up to the article: is it easier to find and download a paper by title/author/DOI via Sci Hub (a minute) versus through any of the other publishers’ platforms with a university subscription (several minutes) or without a subscription (an hour or more to days)? Just consider the time it would take to dig up every one of 30 references in an average journal article: maybe just a half an hour via Sci Hub versus the days and/or weeks it would take to jump through the multiple hoops to first discover, read about, and then gain access and then download them from the over 14 providers (and this presumes the others provide some type of “access” like Elsevier).
Those who lived through the Napster revolution in music will realize that the dead simplicity of their system is primarily what helped kill the music business compared to the ecosystem that exists now with easy access through the multiple streaming sites (Spotify, Pandora, etc.) or inexpensive paid options like (iTunes). If the publishing business doesn’t want to get completely killed, they’re going to need to create the iTunes of academia. I suspect they’ll have internal bean-counters watching the percentage of the total (now apparently 5%) and will probably only do something before it passes a much larger threshold, though I imagine that they’re really hoping that the number stays stable which signals that they’re not really concerned. They’re far more likely to continue to maintain their status quo practices.
Some of this ease-of-access argument is truly borne out by the statistics of open access papers which are downloaded by Sci Hub–it’s simply easier to both find and download them that way compared to traditional methods; there’s one simple pathway for both discovery and download. Surely the publishers, without colluding, could come up with a standardized method or protocol for finding and accessing their material cheaply and easily?
“Hart-Davidson obtained more than 100 years of biology papers the hard way—legally with the help of the publishers. ‘It took an entire year just to get permission,’ says Thomas Padilla, the MSU librarian who did the negotiating.” John Bohannon in Who’s downloading pirated papers? Everyone
Personally, I use use relatively advanced tools like LibX, which happens to be offered by my institution and which I feel isn’t very well known, and it still takes me longer to find and download a paper than it would via Sci Hub. God forbid if some enterprising hacker were to create a LibX community version for Sci Hub. Come to think of it, why haven’t any of the dozens of publishers built and supported simple tools like LibX which make their content easy to access? If we consider the analogy of academic papers to the introduction of machine guns in World War I, why should modern researchers still be using single-load rifles against an enemy that has access to nuclear weaponry?
My last thought here comes on the heels of the two tweets from Alicia Wise mentioned, but not shown in the article:
She mentions that the New York Times charges more than Elsevier does for a full subscription. This is tremendously disingenuous as Elsevier is but one of dozens of publishers for which one would have to subscribe to have access to the full panoply of material researchers are typically looking for. Further, Elsevier nor their competitors are making their material as easy to find and access as the New York Times does. Neither do they discount access to the point that they attempt to find the subscription point that their users find financially acceptable. Case in point: while I often read the New York Times, I rarely go over their monthly limit of articles to need any type of paid subscription. Solely because they made me an interesting offer to subscribe for 8 weeks for 99 cents, I took them up on it and renewed that deal for another subsequent 8 weeks. Not finding it worth the full $35/month price point I attempted to cancel. I had to cancel the subscription via phone, but why? The NYT customer rep made me no less than 5 different offers at ever decreasing price points–including the 99 cents for 8 weeks which I had been getting!!–to try to keep my subscription. Elsevier, nor any of their competitors has ever tried (much less so hard) to earn my business. (I’ll further posit that it’s because it’s easier to fleece at the institutional level with bulk negotiation, a model not too dissimilar to the textbook business pressuring professors on textbook adoption rather than trying to sell directly the end consumer–the student, which I’ve written about before.)
(Trigger alert: Apophasis to come) And none of this is to mention the quality control that is (or isn’t) put into the journals or papers themselves. Fortunately one need’t even go further than Bohannon’s other writings like Who’s Afraid of Peer Review? Then there are the hordes of articles on poor research design and misuse of statistical analysis and inability to repeat experiments. Not to give them any ideas, but lately it seems like Elsevier buying the Enquirer and charging $30 per article might not be a bad business decision. Maybe they just don’t want to play second-banana to TMZ?
Interestingly there’s a survey at the end of the article which indicates some additional sources of academic copyright infringement. I do have to wonder how the data for the survey will be used? There’s always the possibility that logged in users will be indicating they’re circumventing copyright and opening themselves up to litigation.
I also found the concept of using the massive data store as a means of applied corpus linguistics for science an entertaining proposition. This type of research could mean great things for science communication in general. I have heard of people attempting to do such meta-analysis to guide the purchase of potential intellectual property for patent trolling as well.
Finally, for those who haven’t done it (ever or recently), I’ll recommend that it’s certainly well worth their time and energy to attend one or more of the many 30-60 minute sessions most academic libraries offer at the beginning of their academic terms to train library users on research tools and methods. You’ll save yourself a huge amount of time.
wo years ago today, I officially began to (try to) own all of my own web data and host it on my own server.
It began when I moved from WordPress.com to my own domain at BoffoSocko.com. At the time, I wasn’t aware of the IndieWeb movement, but shortly thereafter I ran across IndieWebCamp.org and began using their principles and philosophy, which seemed to me to be how the Web and the Internet should have worked from the start.
Though I still use corporate-owned social media sites (primarily for increased distribution), I no longer rely on them for being the sole source of my internet presence or identity.
Now, through the boffosocko.com domain and a variety of tools, I post all of my content here on my own site first and then syndicate it out to Facebook, Twitter, Google+, LinkedIn, Tumblr, and any other useful sites. [Sadly, because of API restrictions I do still natively post to Instagram, but using OwnYourGram, I’m able to programmatically post the same photo on my site simultaneously.] This means that if any of these silos were to disappear, I would still own all of my own content (including comments I make on other sites, which sometimes could be blogposts/articles in and of themselves, or worse, through administrative interfaces could actually not be approved/published, and therefore completely lost as if I hadn’t written them to begin with.)
Also slowly, but surely, I’ve been able to have all of the resulting interactions that take place on my content on many of these silos (Facebook, Twitter, Google+) appear back on my site in the comments section on the original post. This way, if you’re commenting and interacting on this post on Facebook (for example) and you comment there, the comment is ported over to the comment section on my own site where it exists for everyone to see and interact with.
If you think the mission and philosophy of the Indie Web are interesting and would like some help setting something like this up for yourself, I’m happy to help! Just post a comment below or reply to this post (depending on what platform you’re reading this.)
I also want to say a BIG THANK YOU to all those in the indieweb community who’ve helped me come much farther and faster than I would have done by myself!
I’m copying some useful introductory material from IndieWebCamp.org below for those interested:
What is the IndieWeb?
The IndieWeb is a people-focused alternative to the ‘corporate web’.
Selfdogfood instead of email. Show before tell. Prioritize by scratching your own itches, creating, iterating on your own site.
Design first, protocols & formats second. Focus on good UX & selfdogfood prototypes to create minimum necessary formats & protocols.
Perhaps most importantly, we are people-focused instead of project-focused, and have regular meetups where everyone is welcome:
Homebrew Website Club
Homebrew Website Club is a (bi)weekly meetup of creatives passionate about designing, improving, building, and actively using their own websites, sharing their successes and challenges with a like-minded and supportive community. We have adopted a similar structure as the classic Homebrew Computer Club meetings. [1]
We typically meet every other Wednesday* right after work, 18:30-19:30, across cities and online. Some locations also have a 17:30-18:30 Quiet Writing Hour beforehand. Edinburgh is meeting every week, and some cities meet on Tuesdays!
Apparently, according to Facebook, today is my 10th Anniversary using their service. Mostly I remember that it was pretty lonely for that first year as very few people I knew even had an idea what it was. Fortunately more than 1,300 people I know have joined since and made it a much more enriching experience.
Yesterday I got a thank you from Foursquare for 7 years, and it’s easily been over 8 years on Twitter. Sadly, I miss a lot of the services that started around that time that are no longer with us. Toward that end, I’ll post some thoughts tomorrow about a more pivotal anniversary about which I’m much more excited, and which portends better things for the internet…
